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Mats rudemo 2016 image analysis and spatial statistics.
Monday march 21 2016 10 00 11 45 in mvf26.
Course material 2016.
Mats rudemo 2017 statistics of imaging notes for the course march may 2017 will be available march may 2017.
Lectures mats rudemo rudemo chalmers se mondays 10 00 11 45 and wednesdays 10 00 11 45 in mvf26.
Examination written exam and project report.
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Introductory and first lecture march 20 2017 10 00 11 45.
Methods for acquiring showing filtering and segmentation of images are briefly covered in the first part.
1 2 getting started assuming r has been installed in the normal way on your computer clicking on the link shortcut to r on the desktop will open the rgui offering some drop down menu options and also the r.
The anisotropic and inhomogeneous k function can be found in the package kdirectional available on github.
Mats rudemo plan for 2016 first and introductory lecture.
In rics images are obtained by moving the scanning beam of a confocal laser scanning microscope across the sample according to a raster pattern which introduces a specific time structure and provides information about the dynamics in the image.
The main difference in the new r functions.
We have developed a new analysis method sprics single particle raster image correlation.
Core subjects in the course are pattern recognition and spatial statistics applied.
The newly implemented r functions are extensions of functions available in the r package spatstat version 1 37 0 baddeley and turner 2005.
Statistics using r provides a comprehensive introduction to statistical analysis in r using both command lines and r commander.
Computer exercises called ce 1 4 by mats kvarnström.
Image analysis algorithms for object extraction applied to pictures of agricultural fields may be used to estimate the weed content with a high resolution about 1 m2 and pictures that are.
Will become available from the internet see notes below.
Spatial statistics with image analysis johan lindstr om 1 1 mathematical statistics centre for mathematical sciences lund university lund october 1 2015 johan lindstro m johanl maths lth se spatial statistics 1 31 spatial statistics spatial examples more outline spatial statistics with image analysis bayesian statistics hierarchical modelling.
The course provides a basic knowledge of how to use probabilistic and statistical methods for image analysis.